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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST041735
species: Brachypodium distachyon
miRNA family: MIR160
source: miRBase, original name: bdi-MIR160e (MI0018107)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGAATGCCA

miRNA*
 GCATTGAGGGAGTCATGCAGG

mismatches: 2
bulges: 0
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pre-miRNA
 TAAGGTAATTAATGGGTGATGTTGCCTTCCTGCCTGGCTCCCTGAATGCCATCTGAGAAGCACACCACCGTGCCTGGCGTGGCTCCTGGTTGGCATTGAG
GGAGTCATGCAGGGTTGCAGGTACGTCCTCGCTTACTCCCTTCA

dot-bracket secondary structure
.((((.......((((.(((((.((((((((((.(((((((((.(((((((.((..((..(((.(((.......))).)))..))..)).))))))).))
))))))).))))))....))))))))))))).......))))..


SIMILARITIES
miRBase osa-MIR160f: 0.000000000000002

PMRD osa-miR160f: 0.000000000000002

microPC no hits		UniProt no hits

RFAM mir-160: 0.0000000000006

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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